PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016338-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 473aa    MW: 53305.4 Da    PI: 8.6278
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016338-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.6e-06103125123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C++C++ F r  nL+ H r+H
  NNU_016338-RA 103 YVCEICNQGFQRDQNLQMHRRRH 125
                    9*********************9 PP

2zf-C2H2163.5e-05180202123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k +  +s++k H++t+
  NNU_016338-RA 180 WVCEKCSKGYAVQSDYKAHLKTC 202
                    58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-5102125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.69E-5102125No hitNo description
PROSITE profilePS5015710.97103125IPR007087Zinc finger, C2H2
SMARTSM003550.0052103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SMARTSM00355210144174IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-4171201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.69E-5175200No hitNo description
SMARTSM0035560180207IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MLASNSSPSL PSSEAFTCLE NGNNNNKRKR RPAGTPGEIL RHMGCFSFPS ILIMVLIDRL  60
LQLMNWVFWV SVFDDSFAFM LRLDPDAEVV SLSPKTLLES DRYVCEICNQ GFQRDQNLQM  120
HRRRHKVPWK LLKRETPEVR KRVFVCPEPS CLHHDPCHAL GDLVGIKKHF RRKHSNHKQW  180
VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDACNA GRLRTELQTL  240
QSACLSRTTS SRSPSSDTNF STAPWPGLRM QKPTEPVFLC PERNNPSVIE QRHNLELQLL  300
PSSNPLSNTF DVSVSPNSDE NQATQLQLSI GSCDHGEKIE SHNGSSSKNA GRVSPRDKKA  360
IEEPALATSR LKEQAREQLR LAMAEKAFAE EARQQAKRQI ELAEQEFANA KRIRQQAQAE  420
LDKAQILKEH ATKQINSTIL QITCHACKQQ FQASTLVAPP DENSLGKETA TVG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271104.10.0PREDICTED: protein SHOOT GRAVITROPISM 5
SwissprotQ9C9X71e-132IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A061GQZ70.0A0A061GQZ7_THECC; C2H2-like zinc finger protein
STRINGVIT_01s0011g06400.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-126indeterminate(ID)-domain 14